Strain Passport - Arthrobacter sp. S41
1. Taxonomy
|
Taxonomy
|
|
|---|---|
| Domain | Bacteria |
| Phylum | Actinobacteriota |
| Class | Actinomycetia |
| Order | Actinomycetales |
| Family | Micrococcaceae |
| Genus | Glutamicibacter |
| Species | Glutamicibacter sp004320535 |
2. Assembly Statistics
|
Assembly Statistics
|
|
|---|---|
| MAGID | MAG06 |
| Size (bp) | 2442033 |
| N.contigs | 466 |
| GC (%) | 55.8 |
| N50 (bp) | 5952 |
| Coding Density | 81 |
| N.CDSs | 2396 |
|
Genome Completeness
|
|
|---|---|
| Completeness | 76.34 |
| Contamination | 1.30 |
| Strain heterogeneity | 22.22 |
3. Metabolism and Function (KEGG)
KEGG Function Annotation
Arthrobacter sp. S41 KEGG Functional Classification
KEGG Resistome
| name | Type | Level1 | Level2 | Description | KO |
|---|---|---|---|---|---|
| ko01504 | Gene variants | Macrolide resistance genes | Transporters | K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein | K08217 |
| ko01504 | Gene variants | Macrolide resistance genes | Others | K06979 mph; macrolide phosphotransferase | K06979 |
| ko01504 | Gene sets | Vancomycin resistance modules | Vancomycin resistance, D-Ala-D-Lac type [MD:M00651] | K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] | K07260 |
| ko01504 | Gene sets | Vancomycin resistance modules | Vancomycin resistance, D-Ala-D-Lac type [MD:M00651] | K18346 vanW; vancomycin resistance protein VanW | K18346 |
| ko01504 | Gene sets | Vancomycin resistance modules | Vancomycin resistance, D-Ala-D-Lac type [MD:M00651] | K18353 vanJ; vancomycin resistance protein VanJ | K18353 |
KEGG Toxins
| name | Type | Level1 | Level2 | Description | KO |
|---|---|---|---|---|---|
| ko02042 | Type II toxins: Membrane damaging toxins | Pore-forming toxins, Other | K03699 tlyC; magnesium and cobalt exporter, CNNM family | tlyC; magnesium and cobalt exporter, CNNM family | K03699 |
| ko02042 | Type II toxins: Membrane damaging toxins | Pore-forming toxins, Other | K11068 hlyIII; hemolysin III | hlyIII; hemolysin III | K11068 |
KEGG Bacterial Virulence
| GeneID | KO | Description | PFAM |
|---|---|---|---|
| MAG06_HPLHNM_07670 | K14956 | 6 kDa early secretory antigenic target | Proteins of 100 residues with WXG [PF06013.15]… |
Carbon Metabolism
Nitrogen Metabolism
4. Expert systems
AMRFinderPlus Antimicrobial Resistance
## No AMRFinderPlus data
Virulence factors (VFDB)
## No VFDB data
5. BacDive
## No BacDive data
6. Publications
7. U.S. Patents
First 10 patents out of 42
| patent_number | patent_title |
|---|---|
| 10154670 | Compositions comprising Bacillus strains and methods of use to suppress the activities and growth of fungal plant pathogens |
| 10602743 | Method of inducing drought/salt tolerance using Bacillus megaterium |
| 10645936 | Bacillus megaterium bioactive compositions and metabolites |
| 10683470 | Product for cleaning, sanitizing and hygienization |
| 4332898 | Hybrid plasmid and process of making same |
| 4427771 | Assay method for amylase activity and method of producing maltose dehydrogenase for use therein |
| 4542098 | Production of glucose dehydrogenase and use of the resultant enzyme in the enzymatic synthesis of L-carnitine |
| 4554250 | Method of increased production of penicillin acylase and plasmid employed therein |
| 4935359 | Fermentation process |
| 5030574 | Plasmidless Lac strain of bacilus megaterium QM B1551 |